v4.0.3

RBC 1 and 3 trimmed (poly I:C)

RBC 2 and 4 trimmend  (control)

trim parameters

          Ambiguous limit = 2

          Ambiguous trim = No

          Custom vector trim = No

          Custom vectors = []

          FASTA file name =

          Minimum number of nucleotides in reads = 30

          Paired end data = No

          Put trim-annotations on sequences = No

          Quality limit = 0.05

          Quality trim = Yes

          Remove old trim = Yes

          Show warning regarding annotations and undo = Yes

          Threshold reads length = Yes

          Trim sequences and save in new list = Yes

          Vector limit = 1

          Vector trim = No

RBC1 =  19728783

RBC2 =  16976315

RBC3 =  21269919

RBC4 =  20690534

settings

---

---

7am 5/18

running similar scenario with 4 separate RNAseq files.....